|
Message Boards Message  Problem running mpi code on two nodes of SDSC gordon Hi everybody, When I attempted to run mpiexec with 32 processes on two compute nodes (on SDSC gordon) in interactive mode, it prompts me for a password. Enter passphrase for key... |
| Message Boards Message implementing mysql on lonestar Hi All I am new to the lonestar environment. A program that I wish to use requires that I have access to mysql. Has anybody here had any experience installing mysql on lonestar? I have spent the... |
| Message Boards Message Hop distance between allocated nodes on SDSC Gordon Hi sir, Is there any tool available on SDSC Gordon to get the hop distances between the allocated nodes?. These distances are required for me to create topology graph of allocated nodes. Please... |
| Message Boards Message Problem running mpi code on two nodes of SDSC gordon Hi everybody, When I attempted to run mpiexec with 32 processes on two compute nodes (on SDSC gordon) in interactive mode, it prompts me for a password. Enter passphrase for key... |
| Message Boards Message help monitoring jobs Hello, I am new to using multi-user servers with queue job submissions and am learning lots. Whenever I run new jobs on our local server, I like to watch cpu and memory useage. How can I do this... |
| Message Boards Message Running large grids using OpenFOAM on XSEDE Kraken Hi all, I've been running simulations using OpenFOAM on Kraken for sometime now. Recently I tried running a grid with ~10M cells, but ran into memory issues while trying to do domain decomposition... |
| Message Boards Message Hop distance between allocated nodes on SDSC Gordon Hi sir, Is there any tool available on SDSC Gordon to get the hop distances between the allocated nodes?. These distances are required for me to create topology graph of allocated nodes. Please... |
| Message Boards Message implementing mysql on lonestar Hi All I am new to the lonestar environment. A program that I wish to use requires that I have access to mysql. Has anybody here had any experience installing mysql on lonestar? I have spent the... |
Message Boards Message Quantum Espresso batch file. Dear users: I am now using Gordon to do my calculations. I successfully compiled QE on it and could run jobs with command "mpirun PATH/pw.x -np 1 -in file.in > file.out". However, I cannot run... |
Message Boards Message Where is the udunits library installed? I am new to using modules. But, how can specify a path required to compile a program? I think that I need to figure out where the module udunits/2.1.24 is installed but I am not finding any paths... |
| Message Boards Message Quantum Espresso batch file. Dear users: I am now using Gordon to do my calculations. I successfully compiled QE on it and could run jobs with command "mpirun PATH/pw.x -np 1 -in file.in > file.out". However, I cannot run... |
| Message Boards Message Where is the udunits library installed? I am new to using modules. But, how can specify a path required to compile a program? I think that I need to figure out where the module udunits/2.1.24 is installed but I am not finding any paths... |
| Message Boards Message Where is the udunits library installed? I am new to using modules. But, how can specify a path required to compile a program? I think that I need to figure out where the module udunits/2.1.24 is installed but I am not finding any paths... |
| Message Boards Message Quantum Espresso batch file. Dear users: I am now using Gordon to do my calculations. I successfully compiled QE on it and could run jobs with command "mpirun PATH/pw.x -np 1 -in file.in > file.out". However, I cannot run... |
| Message Boards Message Running large grids using OpenFOAM on XSEDE Kraken Hi all, I've been running simulations using OpenFOAM on Kraken for sometime now. Recently I tried running a grid with ~10M cells, but ran into memory issues while trying to do domain decomposition... |
Message Boards Message Trinity on Stampede I am having trouble getting Trinity (for de novo RNA-Seq assembly) to run on Stampede even though it is available in the the modules. To my understanding it might be related to Java. Has anyone had... |
Message Boards Message jobs -l equivalent in Gordon cluster Hello I find it hard to keep track of my jobs through qstat. Is there anything equivalent to "jobs -l" in Gordon cluster? I basically want the explicit path of the jobs running (or to be run)... |
| Message Boards Message Gaussian restart Hi! I am trying to restart a G09 calculation on trestles. I keep getting an error saying that the checkpoint file does not exist. My question is where should I put the checkpoint file and how... |
| Message Boards Message Non-MPI jobs on comet (ie data parallelized) Please offer advice, and possibly add to your comet:/share/apps/examples/ on how to run tasks that are parallelized by splitting data, not by using MPI or open-MPI message passing. The examples... |
| Message Boards Message 'wait' - a simple question Hi, I'm new to setting up batch files, and have a question about the 'wait' command. The goal here is to run a lot of models with the 'cloudy' code, but last time I ran my batch file, it only... |
