ECSS Symposium
ECSS staff share technical solutions to scientific computing challenges monthly in this open forum.
The ECSS Symposium allows the over 70 ECSS staff members to exchange on a monthly basis information about successful techniques used to address challenging science problems. Tutorials on new technologies may be featured. Two 30-minute, technically-focused talks are presented each month and include a brief question and answer period. This series is open to everyone.
Symposium coordinates
Day and Time: Third Tuesdays @ 1 pm Eastern / 12 pm Central / 10 am Pacific
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Note – Symposium not held in July and November due to conflicts with PEARC and SC conferences.
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Meeting ID: 892 8873 8446
Password: 398208
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Upcoming events are also posted to the Training category of XSEDE News.
Due to the large number of attendees, only the presenters and host broadcast audio. Attendees may submit chat questions to the presenters through a moderator.
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Content with tag 2013-symposium .
Supercomputers are making DISSCO different
Sever Tipei, a Professor of Composition-Theory at the University of Illinois at Urbana-Champaign, composes with a keyboard -- a QWERTY keyboard, that is, and a healthy appetite for experimentation.
By Katherine Kendig, NCSA Public Affairs
Sever Tipei, a Professor of Composition-Theory at the University of Illinois at Urbana-Champaign, composes with a keyboard -- a QWERTY keyboard, that is, and a healthy appetite for experimentation. In 2005, he and mathematician Hans Kaper (of the DOE's Argonne National Laboratory) created DISSCO, a Digital Instrument for Sound Synthesis and Composition. As its name suggests, DISSCO doesn't just allow users to compose music; it also enables them to digitally create the sounds that will comprise each piece. Unlike an electronic instrument with a variety of pre-programmed sound options, DISSCO users build sounds algorithmically – and completely from scratch.
Now in its second decade, Tipei says DISSCO is "an ongoing project." The aesthetics and the functionality of the program have come a long way since the beginning, with user-friendly updates like the addition of a custom DISSCO interface to replace the original command-line operation. Now, Tipei is implementing new features and marshalling outside resources to keep driving DISSCO forward: to improve DISSCO's computational speed, he's enlisted the computing and consulting resources of XSEDE.
Tipei says Alan Craig, a member of XSEDE's Extended Collaborative Support Services (ECSS) team, was extremely helpful in pushing the collaboration forward: "Alan has been instrumental. I didn't know about XSEDE – he introduced me to it." Craig specializes in helping researchers from the arts, social sciences, and humanities advance their projects using XSEDE resources. To enhance DISSCO, ECSS consultants Paul Rodriguez and Bob Sinkovits worked on the Comet supercomputer at the San Diego Supercomputer Center to implement parallel processing and reduce the compute time for sound synthesis. Heading into the collaboration with XSEDE, a twelve-minute piece of music could take DISSCO fifty minutes to compute because for each second of sound, Tipei says, 44,100 samples representing frequency, volume, depth, location, and other "shades of gray" must be processed. Rodriguez and Sinkovits achieved a 70% reduction in computing time by implementing the Message Passing Interface (MPI) for parallel architectures on top of existing code -- meaning that same twelve-minute piece could now be computed in as little as fifteen minutes. Tipei says Craig provided consistent communication, cooperation, and support as Rodriguez and Sinkovits optimized DISSCO's code.
DISSCO forces users to engage with sound in multidimensional ways. Whereas pitch is often considered the most important aspect of a sound, DISSCO gives other features equal importance. For instance, spatialization – the perceived location of a sound – "brings the textures [of a piece] alive." The possibilities for each created sound are nearly unlimited, and Tipei says that the process of composing and synthesizing sounds is typically recursive. It can take a month, he says, to fully conceive and create a three-minute piece.
The music that results is inherently experimental. Just like in the sciences, Tipei says, "you set up an experiment, but you might be surprised by what comes out." Tipei himself actively employs uncertainty in his music, using DISSCO as a tool to break away from narrativity. "No matter what you do, there is going to be some cohesion – each piece has its own coherence. But," he adds, "not necessarily a story." By working against expectation, Tipei forces listeners to actively synthesize what they're hearing, instead of accepting something that feels ready-made. "It's a step farther than jazz," he says.
Sound synthesis can be useful for more than musical composition, and DISSCO isn't just for musicians: Tipei notes the program can be a powerful tool for sonification, or the representation of scientific data through sound. "DISSCO can handle more than a dozen degrees of freedom in the definition of a single sound," Tipei says, so data -- particularly complex computations -- can be distinctly rendered, giving researchers an auditory supplement or alternative to traditional visualization. Collaboration with scientists studying Graph Theory and Information Theory could also create a pathway for DISSCO to contribute to the study of artificial life: "Determining the evolution of a musical object in continuous transformation, an Evolving Entity… could trigger new ideas" in the field, Tipei suggests.
As DISSCO continues to develop in a changing technological landscape, Tipei is grateful for the advances working with XSEDE has enabled. While commercial sound synthesis software is more readily available in 2017 than it was when DISSCO was brought to life in 2005, Tipei says DISSCO is a step ahead, fusing composition and sound synthesis in one environment and providing a measure of continuity other programs don't offer. "I don't mean to brag," he adds, but "DISSCO is different."

Image of DISSCO interface:
Tools of the 21st Century: HPC, Analytical Ultracentrifugation and a New Detector
UTRC, XSEDE HPC resources used to help uncover a new protein interaction
West Nile virus is maintained in the environment by a mosquito-bird transmission cycle. This virus can be transmitted to humans by the bite of an infected mosquito or tick. Although most infected people develop no symptoms or a mild flu-like illness, in some cases, West Nile virus can enter the brain and induce encephalitis...
Read More (link goes to another site)
Functions of the 3' and 5' genome RNA regions of members of the genus Flavivirus. Brinton MA, Basu M. Virus Res. 2015 Aug 3;206:108-19. doi: 10.1016/j.virusres.2015.02.006. Epub 2015 Feb 13. Review.
October 17, 2017
Geodynamo Simulation Code for Paleomagnetic Observations
Presenter(s): Shiquan Su (NCAR) Chad Burdyshaw (NICS)
Principal Investigator(s): David Gubbins (Scripps Institution of Oceanography at UCSD)
This study characterizes a geodynamo simulation code for paleomagnetic observations targeted to run on TACC Stampede2 KNL cluster; a hybrid, distributed many-core parallel architecture. Issues examined are parallel scaling across distributed nodes and within the many core architecture, as well as vectorization efficiency, arithmetic intensity and memory throughput.
This presentation includes two parts. In the first part, Shiquan Su from NCAR will introduce the background of the project, the parallelization algorithm, the experience on Stampede KNL cluster, OpenMP treatment, and the two approaches to run the project jobs on the machines. In the second part, Chad Burdyshaw from UTK takes a close look at the code. Chad will discuss the tools used to interrogate performance, observations, remedies, and potential solutions.
XSEDE Applauds Nobel Prize Winners for Discovery of Gravitational WavesXSEDE congratulates Rainer Weiss of Massachusetts Institute of Technology, Barry Barish, and Kip Thorne, both at the California Institute of Technology, who were honored for "decisive contributions to the LIGO detector and the observation of gravitational waves" with the 2017 Nobel Prize in Physics. XSEDE has been a collaborator in this research since 2013, and is looking forward to future collaborations with the LIGO project. Read more >> | ![]() |
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Tools of the 21st Century: HPC, Analytical Ultracentrifugation, and a New DetectorUsing an XSEDE community allocation, the UltraScan Analysis Software project relies on supercomputers such as Stampede2 and Jetstream at the Texas Advanced Computing Center, and Comet at the San Diego Supercomputer Center to allow users to make brilliant discoveries. For example, these users were life scientists and chemists who made a discovery about how the West Nile virus uses cell proteins to facilitate its replication. The XSEDE community allocation offers the use of a network of software tools that were developed as a science gateway. This enables entire communities of users associated with a common scientific goal to use national resources through a common interface. Read more >> | |
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We have a new look!We are excited to announce the recent launch of our redesigned XSEDE website. We're striving to continually improve the online experience of the XSEDE community, so we hope you enjoy it! Read more >> | |
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Submit XSEDE Research Allocation Requests by October 15XSEDE is now accepting Research Allocation Requests for the allocation period January 1, 2018 to December 31, 2018. The submission period is from September 15, 2017 thru October 15, 2017. Please be sure to review the new XSEDE systems and important policy changes before you submit your allocation request through the XSEDE User Portal. Read more >> | |
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XSEDE Cyberinfrastructure Integration UpdatesThe XSEDE Cyberinfrastructure Integration (XCI) team has released new documentation for XSEDE Science Gateways developers and operators on integrating XSEDE's user authentication services into science gateways. XCI and the National Center for Genome Analysis Support convened a birds of a feather meeting at the 2017 Richard Tapia Celebration of Diversity in Computing entitled "What I Wish I Had Known When I Started in Computational Science" which focused on the adoption of cyberinfrastructure tools and practices. Read more >> | |
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Call for PEARC18 ContributionsThe PEARC18 Executive Committee invites you to help shape the technical program of the PEARC18 conference. To this end, we invite you to submit proposals (abstracts only) via https://ssl.linklings.net/conferences/pearc/. The opportunity to submit proposals will close at 10 p.m. EST on Friday, December 1, 2017. Authors of proposals selected for technical review will be contacted by Friday, January 19, 2018. Read more >> | ![]() |
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Events |
XSEDE applauds Nobel Prize winners for discovery of gravitational waves
Three leading LIGO physicists will share this year's award.
Urbana, IL---The Extreme Science and Engineering Development Environment (XSEDE) congratulates the three scientists who were honored for "decisive contributions to the LIGO detector and the observation of gravitational waves" with the 2017 Nobel Prize in Physics. Rainer Weiss, Massachusetts Institute of Technology, received one-half of the award and Barry Barish and Kip Thorne, both at the California Institute of Technology, share half.
"XSEDE is very pleased to see this honor bestowed on the pioneers that led the formation and execution of the LIGO experiment," said John Towns, XSEDE Principal Investigator. "It is an exceedingly rare event for a new window of observation to be opened on the universe."
LIGO is a collaborative project with over one thousand researchers from more than 20 countries. Weiss and Thorne originally proposed LIGO as a means of detecting gravitational waves in the 1980s. Barish is recognized for bringing the project to completion.
On Sept. 14, 2015, at 5:51 a.m. Eastern Daylight Time (9:51 UTC) scientists observed for the first-time ripples in the fabric of spacetime called gravitational waves, arriving at the earth from a cataclysmic event in the distant universe. This confirmed a major prediction of Albert Einstein's 1915 general theory of relativity and opens an unprecedented new window onto the cosmos.
The gravitational waves were detected by both of the twin LIGO detectors, located in Livingston, La., and Hanford, Wash. The LIGO Observatories are funded by the National Science Foundation, and were conceived, built, and are operated by Caltech and the Massachusetts Institute of Technology. The discovery, published in the journal Physical Review Letters, was made by the LIGO Scientific Collaboration and the Virgo Collaboration.
XSEDE, a network of the National Science Foundation's cyberinfrastructure investments, includes not only high-performance computing systems, but experts who collaborate with researchers to move projects forward. LIGO first obtained access to XSEDE resources in 2013 and is now using the Open Science Grid as its standard interface for XSEDE and other shared computing systems.
Since then, LIGO has been allocated millions of hours on XSEDE's high-performance computers including Stampede from the Texas Advanced Computing Center at The University of Texas at Austin and Comet from the San Diego Supercomputer Center at the University of California San Diego.
This collaboration also provided LIGO with access to XSEDE's Extended Collaborative Support Services (ECSS). During the first year of the collaboration, ECSS worked with LIGO to increase the speed of the applications—making them 8-10 times faster on average.
Towns continued, "The collaborative efforts XSEDE has engaged in with the LIGO project have been quite fruitful and we look forward to ongoing observations of events and greater understanding of our universe."
XSEDE Congratulates Rainer Weiss, Barry Barish, and Kip Thorne on their Nobel Prize!

