XSEDE Science Successes
Satellite Advances, NSF Computation Power Rapid Mapping of Earth’s Surface
Satellite Advances, NSF Computation Power Rapid Mapping of Earth's Surface

By Ken Chiacchia and Tiffany Jolley
New satellite technologies have completely changed the game in mapping and geographical data gathering, reducing costs and placing a new emphasis on time series and timeliness in general, according to Paul Morin, director of the Polar Geospatial Center at the University of Minnesota.
In the second plenary session of the PEARC conference in New Orleans on July 12, Morin described how access to the DigitalGlobe satellite constellation, the NSF XSEDE network of supercomputing centers and the Blue Waters supercomputer at the National Center for Supercomputing Applications at the University of Illinois at Urbana-Champaign have enabled his group to map Antarctica—an area of 5.4 million square miles, compared with the 3.7 million square miles of the "lower 48" United States—at 1-meter resolution in two years. Nine months later, then-president Barack Obama announced a joint White House initiative involving the NSF and the National Geospatial Intelligence Agency (NGIA) in which Morin's group mapped a similar area in the Arctic including the entire state of Alaska in two years.
"If I wrote this story in a single proposal I wouldn't have been able to write [any proposals] afterward," Morin said. "It's that absurd." But the leaps in technology have made what used to be multi-decadal mapping projects—when they could be done at all—into annual events, with even more frequent updates soon to come.
The inaugural Practice and Experience in Advanced Research Computing (PEARC) conference—with the theme Sustainability, Success and Impact—stresses key objectives for those who manage, develop and use advanced research computing throughout the U.S. and the world. Organizations supporting this new HPC conference include the Advancing Research Computing on Campuses: Best Practices Workshop (ARCC), the Extreme Science and Engineering Development Environment (XSEDE), the Science Gateways Community Institute, the Campus Research Computing (CaRC) Consortium, the Advanced CyberInfrastructure Research and Education Facilitators (ACI-REF) consortium, the National Center for Supercomputing Applications' Blue Waters project, ESnet, Open Science Grid, Compute Canada, the EGI Foundation, the Coalition for Academic Scientific Computation (CASC) and Internet2.
Follow the Poop
One project made possible with the DigitalGlobe constellation—a set of Hubble-like multispectral orbiting telescopes "pointed the other way"—was a University of Minnesota census of emperor penguin populations in Antarctica.
"What's the first thing you do if you get access to a bunch of sub-meter-resolution [orbital telescopes covering] Antarctica?" Morin asked. "You point them at penguins."
Thanks in part to a lack of predators the birds over-winter on the ice, huddling in colonies for warmth. Historically these colonies were discovered by accident: Morin's project enabled the first continent-wide survey to find and estimate the population size of all the colonies.
The researchers realized that they had a relatively easy way to spot the colonies in the DigitalGlobe imagery: Because the penguins eat beta-carotene-rich krill, their excrement stains the ice red.
"You can identify their location by looking for poo," Morin said. The project enabled the first complete population count of emperor penguins: 595,000 birds, +14%
"We started to realize we were onto something," he added. His group began to wonder if they could leverage the sub-meter-resolution, multispectral, stereo view of the constellation's WorldView I, II and III satellites to derive the topography of the Antarctic, and later the Arctic. One challenge, he knew, would be finding the computational power to extract topographic data from the stereo images in a reasonable amount of time. He found his answer at the NSF and the NGIA.
"We proposed to a science agency and a combat support agency that we were going to map the topography of 30 degrees of the globe in 24 months."
Blue Waters on the Ice
Morin and his collaborators found themselves in the middle of a seismic shift in topographic technology.
"Eight years ago, people were doing [this] from the ground," with a combination of land-based surveys and accurate but expensive LIDAR mapping from aircraft, he said. These methods made sense in places where population and industrial density made the cost worthwhile. But it had left the Antarctic and Arctic largely unmapped.
Deriving topographic information from the photographs posed a computational problem well beyond the capabilities of a campus cluster. The group did initial computations at the Ohio Supercomputer Center, but needed to expand for the final data analysis. In 2014 XSEDE Project Director John Towns offered XSEDE's help in tackling the massive scale of data that would come from an array of satellites collecting topographic images. From 2014 to 2015, Morin used XSEDE resources, most notably Gordon at San Diego Supercomputer Center and XSEDE's Extended Collaborative Support Service to carry out his initial computations. XSEDE then helped his group acquire an allocation on Blue Waters, an NSF-funded Cray Inc. system at Illinois and NCSA with 49,000 CPUs and a peak performance of 13.3 petaflops.
Collecting the equivalent area of California daily, a now-expanded group of subject experts made use of the polar-orbiting satellites and Blue Waters to derive elevation data. They completed a higher-resolution map of Alaska—the earlier version of which had taken the U.S. Geological Survey 50 years—in a year. While the initial images are licensed for U.S. government use only, the group was able to release the resulting topographic data for public use.
Mapping Change
Thanks to the one-meter resolution of their initial analysis, the group quickly found they could identify many man-made structures on the surface. They could also spot vegetation changes such as clearcutting. They could even quantify vegetation regrowth after replanting.
"We're watching individual trees growing here."
Another set of images he showed in his PEARC17 presentation were before-and-after topographic maps of Nuugaatsiaq, Greenland, which was devastated by a tsunami last month. The Greenland government is using the images, which show both human structures and the landslide that caused the 10-meter tsunami, to plan recovery efforts.
The activity of the regions' ice sheets was a striking example of the technology's capabilities.
"Ice is a mineral that flows," Morin said, and so the new topographic data offer much more frequent information about ice-sheet changes driven by climate change than previously available. "We not only have an image of the ice but we know exactly how high it is."
Morin also showed an image of the Larsen Ice Shelf revealing a crack that had appeared in the glacier. The real news, though, was that the crack—which created an iceberg the size of the big island of Hawaii—was less than 24 hours old. It had appeared sometime after midnight on July 12.
"We [now] have better topography for Siberia than we have for Montana," he noted.
New Directions
While the large, high-resolution satellites have already transformed the field, innovations are already coming that could create another shift, Morin said.
"This is not your father's topography," he noted. "Everything has changed; everything is time sensitive; everything is on demand." In an interview later that morning, he added, "XSEDE, Blue Waters and NSF have changed how earth science happens now."
One advance won't require new technology: just a little more time. While the current topographic dataset is at 1-meter resolution, the data can go tighter with more computation. The satellite images actually have a 30-centimeter resolution, which would allow for the project to shift from imaging objects the size of automobiles to those the size of a coffee table.
At that point, he said, "instead of [just the] presence or absence of trees we'll be able to tell what species of tree. It doesn't take recollection of imagery; it just takes reprocessing."
The new, massive constellation of CubeSats such as the Planet company's toaster-sized Dove satellites now being launched promises an even more disruptive advance. A swarm of these satellites will provide much more frequent coverage of the entire Earth's surface than possible with the large telescopes.
"The quality isn't as good, but right now we're talking about coverage," Morin said. His group's work has taken advantage of a system that allows mapping of a major portion of the Earth in a year. "What happens when we have monthly coverage?"
Feature image caption: Buildings in Juneau, Alaska, as shown in the University of Minnesota topographic survey of the Arctic region. The airport runway can be seen at the bottom.
Authors
Ken Chiacchia, Senior Science Writer, Pittsburgh Supercomputing Center
Tiffany Jolley Strategic Content Specialist, National Center for Supercomputing Applications
- XSEDE Resources, Trinity Enable Non-Human Primate Reference Transcriptome Resource to Support Study of Genes in Our Closest Relatives
- Turtle Tree of Life
- Region 1 Champions meet at Idaho National Laboratory
- Crash test simulations expose real risks
- NSF supports development of new arctic maps
- How was the planet Earth formed?
- Exploring Large Data for Scientific Discovery
- XSEDE Value Added
- Scholars program helps realize dream
- Making sense of cyberinfrastructure
- XSEDE15 Wrap Up
- Bioinformatics Scripts Solutions
- XSEDE15 Plenary Panel
- Polymer Potential
- The Future of NSF Advanced Computing Infrastructure
- 2015 International Summer School on HPC Challenges
- A Catalyst for Complexity
- As Austin Grows So Does Its Traffic Woes
- The University of Tennessee, Knoxville, Wins Second Place in an International Student Supercomputing Competition
- PSC Receives NSF Award for Bridges Supercomputer
- Innovative New Supercomputers Increase Nation's Computational Capacity and Capability
- Exploring Competitive Balance
- A Direct Bridge
- The Dopamine Transporter
- XSEDE Supercomputers Laid the Foundation for an Unprecedented Simulation of Cosmological Evolution
- Big Data Needs Big Funding
- XSEDE helps create a more effective way to assemble genomic information
- Of Micelles and Machines
- XSEDE Allocation System to Receive Makeover
- Internet2: Advancing Science in the Age of Big Data
- XSEDE User Portal At Your Fingertips: Mobile App
- Researchers Study Air Pollution
- Dan Stanzione: New Executive Director at TACC
- People of XSEDE: Campus Champions - Preaching the HPC Gospel
- XSEDE and Blue Waters Go Supernova
- Two at a Time
- Show Him the Money
- Cosmic Slurp
- Turning Salt into the Unknown
- Looking Inside Images
- Farming the Wind
- Breaking out of the Digital Graveyard
- The Mechanism of Short-term Memory
- Open Science and Industry Collaboration
- XSEDE, Prace Call for Requests of Joint Support
- XSEDE Wins HPCWire Award
- Shields to Maximum, Mr. Scott
- The Ultimate Timekeeper
- Blue Waters, XSEDE sign collaborative agreement
- People of XSEDE - Outreach programs set XSEDE apart
- Wrangler Reels in Award
- The Great Comet: NSF awards $12 Million Grant to SDSC to deploy Comet
- Meet the Gribbles
- 2013 Nobel Prize in Chemistry winners bring HPC to the lab
- XSEDE helps create a more effective way to assemble genomic information
- XSEDE facilitates large-scale image analysis to understand diseases
- XSEDE announces new campus briding services and tools
- XSEDE, NSF Release Cloud Survey Report
- XSEDE13: Programming Competition Allows Students to "Geek Out" and Gain Crucial Skillsets
- Katlin Thaney gave XSEDE13 Keynote: Gateways for Open Science
- XSEDE13 conference selects best papers, posters visualizations and more
- XSEDE13 speaker tells how turbulence simulations help make movie magic
- XSEDE13 Plenary Talk: Accelerating Brain Research with Supercomputers
- Invited speakers announced for Extreme Scaling Workshop - Heterogenous Computing
- XSEDE13 speaker LeManuel "Lee" Bitsóí: Democratizing Scientific Research
Read more about Bitsóí's talk at this year's conference - More than 70 students from 4 continents gain HPC skills at fourth annual Summer School
- Registration opens for Extreme Scaling Workshop 2013
- Campus Champions Fellows Named
- Campus Champions program reaches 200 members
- Rock Snot Genomics: University of Texas researchers use advanced sequencing and TACC's Ranger supercomputer to uncover origin of common algae
- Experiencing some turbulence: Researchers Take on One of Physics' Most Important and Enduring Problems
- Register now for Virtual School summer courses on data-intensive and many-core computing
- XSEDE seeks a Scientific Workflow Specialist for Extended Collaborative Support Service
Applications are due May 31, 2013 - XSEDE13 schedule now available online
- Students from high school to grad school levels invited to participate in programming contest at XSEDE13 high performance computing conference
- SDSC's Gordon enables discoveries in the study of genetics Read about Gordon's role in pinpointing the genetic patterns underlying autism-spectrum disorders, schizophrenia and similar brain conditions.
- XSEDE, National Computational Science Institute offer summer workshops for educators
- XSEDE13 Student Day applications due May 15 High school and undergraduate students get hands-on experience in computational science and interact with expert researchers
- XSEDE upgrades to Internet2's 100G Network
- XSEDE13 Registration now open!
- Get to know XSEDE Staff XSEDE Allocations Manager Ken Hackworth: The Man, The Myth, The Legend
- Two sponsors commit to XSEDE13 conference: Cray and Intel .
- Texas Unleashes Stampede
- Swirling Secrets-Understanding the turbulence of gases
- Blacklight helps researchers develop better materials for carbon capture
- Journey to the limits of spacetime
- Students invited to participate in XSEDE13 Multiple ways for high school, undergraduate, and graduate students to get involved; funding support available.
- XSEDE Call for Humanities, Arts and Social Science ProjectsIf you and your collaborators need to access to large collections of digital data, need more computer power, or require substantial storage capacity and computing power – please share it with XSEDE.
- XSEDE needs your feedback! If you received an invitation to complete the 2013 User Satisfaction Survey, please take 10 minutes today to share your comments about the XSEDE user experience.
- XSEDE deploys Globus Online for data transfer The first official software service on XSEDE has been accepted for production deployment
-
The Stampede Era Begins XSEDE supercomputer now operational and available to the national open science community
- Call for ParticipationInternational Summer School on HPC Challenges in Computational Sciences
- XSEDE, European Grid Infrastructure seek collaborative use cases
Deadline extended to March 8! - XSEDE offers free online parallel computing course Learn to use parallel computers more efficiently and productively
- NICS makes the top of Green500 list XSEDE partner recognized for energy-conscious high-performance computer, Beacon
- XSEDE's John Towns appointed to Compute Canada board of directors Board includes leaders in industry, academia, and computational research
- STILL ACCEPTING RESPONSES to Cloud Use Survey from XSEDE, NSF All researchers encouraged to respond and help shape future of cloud computing in XSEDE
- Make room for Stampede: TACC expands data center for new supercomputer
Read more about the new data center at TACC
See TACC Deputy Director, Dan Stanzione describe the new center - SDSC welcomes Gordon supercomputer as a research powerhouse
Read more about SDSC's Gordon - Campus Bridging Early Adopter Program issues Call For Proposals to be submitted Dec. 1-9
Read more about the program - XSEDE12 announced -- first conference of Extreme Science and Engineering Discovery Environment
Read more about XSEDE12 - PSC, SGI Team Up on Shared-Memory Supercomputer
Read more about PSC's shared-memory supercomputer - Pittsburgh Supercomputing Center Wins High-Performance Computing Award
Read more about PSC - Blacklight Goes to Work at the Pittsburgh Supercomputing Center
Read more about Blacklight - Ranger supercomputer's lifespan extended one year as part of NSF XD initiative.
Read more about Ranger - Kraken set to deliver 2 billionth CPU hour, sustains 96 percent utilization
Read more about Kraken - TACC Offers New, Broader Computational Biology Software Stack to Open Science Community.
Read more about biology software stack - ACM launches new Special Interest Group on High Performance Computing. Join by Nov. 18 for special rate.
Read more about the new SIGHPC - 'What Are You Working on Today,' Ranger, Jaguar and iForge?
Read more about TACC's Ranger supercomputer
Read more about ORNL's Jaguar supercomputer
Read more about NCSA's iForge supercomputer - Adventures with HPC Accelerators, GPUs and Intel MIC Coprocessors
Read more about experiences with new hardware - Developing Scientific Computing Communities
Read more about development efforts - Indiana University to create the National Center for Genome Analysis Support, which will be integrated with XSEDE resources
Read more about the NCGAS at IU - Scientists use XSEDE/TeraGrid resources to determine how shock waves move through solids
Read more about 'super-elastic shock waves' - XSEDE upgrades network
Read more about the XSEDE upgrade - Richard Tapia, Rice University mathematician and professor and member of XSEDE outreach team, receives National Medal of Science
Watch the Oct. 21 webcast
Read more about Tapia's award
Learn more about Richard Tapia - Stampede's comprehensive capabilities to bolster U.S. open science computational resources
Read more about Stampede
Watch a video of Jay Boisseau, director of TACC, discussing Stampede - SDSC announces scalable, high-performance data storage cloud
Read more about SDSC cloud - Appro and SDSC Gordon supercomputer to provide up to 35M IOPS
Read more about SDSC's Gordon - Dr. Barry Schneider from the National Science Foundation to describe XSEDE in the Oklahoma Supercomputing Symposium keynote, Oct. 11-12
Read more about Dr. Schneider's keynote
Go to symposium site - Students research solar cells with HPC
Read more about HPC and solar research - Seeing Is Believing: Extreme Digital visualization and data analysis resources help researchers derive insights from massive data sets
Read more about Extreme Digital - New "Memory Advantage Program" on Blacklight at the Pittsburgh Supercomputing Center
Read more about PSC's MAP - XSEDE project brings advanced cyberinfrastructure, digital services, and expertise to nation's scientists and engineers
Read more about XSEDE - Watch the John Towns video
- How XSEDE will facilitate collaborative science
Read more about XSEDE and collaboration