In coordination with the ACCESS team, XSEDE has paused the processing of Startup, Education, and other allocation requests from August 17-31. This pause will ensure that no requests are lost while we are making infrastructure updates behind the scenes and handing things over to ACCESS. If you have questions, contact help@xsede.org. The ACCESS team will resume taking allocation requests on September 1 via https://access-ci.org/.

The discussion forums in the XSEDE User Portal are for users to share experiences, questions, and comments with other users and XSEDE staff. Visitors are welcome to browse and search, but you must login to contribute to the forums. While XSEDE staff monitor the lists, XSEDE does not guarantee that questions will be answered. Please note that the forums are not a replacement for formal support or bug reporting procedures through the XSEDE Help Desk. You must be logged in to post to the user forums.

« Back to General Discussion

comet's gdal missing glibc dependency?

Combination View Flat View Tree View
Threads [ Previous | Next ]
I'm trying to run gdaladdo on comet and getting a "GLIBC not found" error.
I am using the gdal module but still getting this error.

Is there a way for me to fix the error in my submission script?
I tried installing with yum but got a permissions error (not surprising).

Here is my submission script:

 1#!/bin/bash
 2#SBATCH --job-name ="wv_mosaic_gdal"
 3#SBATCH --mem=1G
 4#SBATCH --partition=large-shared
 5#SBATCH --time=24:00:00
 6
 7module purge
 8module load gdal
 9
10export GDAL_VRT_ENABLE_PYTHON=YES
11export GDAL_VERT_ENABLE_PYTHON
12
13gdaladdo --config BIGTIFF_OVERIEW YES -ro CETX_overview.vrt 1


and the full error:

1gdaladdo: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by gdaladdo)
2gdaladdo: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /opt/gdal/lib/libgdal.so.20)
3gdaladdo: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /opt/gdal/lib/libgdal.so.20)
4gdaladdo: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /opt/gdal/lib/libgdal.so.20)
5gdaladdo: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /opt/gdal/lib/libgdal.so.20)