running blastx James Theodore Van Leuven https://conferences.xsede.org/c/message_boards/find_message?p_l_id=&messageId=583569 2013-08-26T21:00:50Z 2013-08-26T21:00:50Z

Hello,<br /><br />I could use a little help learning how to run blastx on stampede. I am struggling to learn the best way to run the program to take advantage of many cores (including the co-processors). <br /><br />I have a local database download (nr) and I have a multifasta file containing ~100,000 sequences.<br /><br />It looks like blastx version 2.2.28+ is already installed on Stampede. mpiblast is also installed, although I have no experience running it.<br /><br />As I understand it, the most resource-utilizing way to run it would be to run it on both the co-processor and the node, I&#039;m just not sure how to do so.<br /><br />Thank you for any pointers,<br /><br />-jt

James Theodore Van Leuven 2013-08-26T21:00:50Z