'wait' - a simple question
'wait' - a simple question
'wait' - a simple question
Karen Pardos Olsen
https://conferences.xsede.org/c/message_boards/find_message?p_l_id=&messageId=1185333
2016-03-31T15:51:24Z
2016-03-31T15:51:24Z
Hi,<br /><br />I'm new to setting up batch files, and have a question about the 'wait' command.<br /><br />The goal here is to run a lot of models with the 'cloudy' code, but last time I ran my batch file, it only calculated 72 models out of ~700. So in my new batch file (part of it inserted below), I added an increasing 'offset' (from 0 to 19), then a 'wait' to wait for the first 20 models to finish, after which the offset is reset to 0. Is that possible at all? Is there a more correct way of doing this?<br /><br />Batch file has been submitted but is still in the queue so I thought I'd just ask.<br /><br />Thanks in advance,<br />Karen<br /><br />#!/bin/bash -l<br /><br />#----------------------------------------------------<br /># SLURM job script to run SIGAME on <br /># TACC's Stampede system.<br />#<br />#----------------------------------------------------<br /><br />#SBATCH -J SIGAME-test # Job name<br />#SBATCH -o sigame.%j.out # Name of stdout output file (%j expands to jobId)<br />#SBATCH -p normal # Queue name<br />#SBATCH -N 20 # Total number of nodes requested (16 cores/node)<br />#SBATCH -n 20 # Total number of mpi tasks requested<br />#SBATCH -t 02:00:00 # Run time (hh:mm:ss) - 1.5 hours<br />#SBATCH --mail-user=...<br />#SBATCH --mail-type=begin # email me when the job starts<br />#SBATCH --mail-type=end # email me when the job finishes<br /><br />#SBATCH -A ... # <-- Allocation name to charge job against<br /><br /># Launch this<br />ibrun -o 0 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_0 &<br />ibrun -o 1 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_1 &<br />ibrun -o 2 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_2 &<br />ibrun -o 3 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_3 &<br />ibrun -o 4 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_4 &<br />ibrun -o 5 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_5 &<br />ibrun -o 6 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_6 &<br />ibrun -o 7 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_7 &<br />ibrun -o 8 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_8 &<br />ibrun -o 9 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_9 &<br />ibrun -o 10 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_10 &<br />ibrun -o 11 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_11 &<br />ibrun -o 12 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_12 &<br />ibrun -o 13 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_13 &<br />ibrun -o 14 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_14 &<br />ibrun -o 15 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_15 &<br />ibrun -o 16 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_16 &<br />ibrun -o 17 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_17 &<br />ibrun -o 18 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_18 &<br />ibrun -o 19 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_19 &<br />wait<br />ibrun -o 0 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_20 &<br />ibrun -o 1 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_21 &<br />ibrun -o 2 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_22 &<br />ibrun -o 3 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_23 &<br />ibrun -o 4 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_24 &<br />ibrun -o 5 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_25 &<br />ibrun -o 6 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_26 &<br />ibrun -o 7 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_27 &<br />ibrun -o 8 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_28 &<br />ibrun -o 9 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_29 &<br />ibrun -o 10 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_30 &<br />ibrun -o 11 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_31 &<br />ibrun -o 12 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_32 &<br />ibrun -o 13 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_33 &<br />ibrun -o 14 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_34 &<br />ibrun -o 15 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_35 &<br />ibrun -o 16 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_36 &<br />ibrun -o 17 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_37 &<br />ibrun -o 18 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_38 &<br />ibrun -o 19 -n 1 /work/04075/kpolsen/SIGAME/cloudy/source/cloudy.exe -p GMC_39 &<br />wait
Karen Pardos Olsen
2016-03-31T15:51:24Z